myExperiment

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Paul Fisher

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Gene Cosine Scores

Created: 2009-08-10 16:00:45

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This excel file contains a list of genes linked to the resistance to African trypanosomiasis in the mouse. Genes from the Tir1 QTL were used in a search through PubMed. The results were then correlated to the trypanosomiasis resistance phenotype. The higher the score (and ranking) the more related to the phenotype the gene is likely to be. This is based on the co-occurrence of terms within the gene and phentoype corpora.

File type: Excel workbook

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abstracts
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african trypanosomiasis
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authors
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cosine vector space
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data-driven
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enrichment
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entity recognition
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gene
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geneid
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genes
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mouse
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ncbi
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phenotype
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pubmed
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ranking
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sleeping sickness
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term
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term extraction
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terms
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text
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text mining
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text mining; term extraction; entity recognition

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Paul Fisher

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Pathway Cosine Scores from Day7 and Tir1 QTL

Created: 2009-08-10 15:55:24

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This excel file contains a list of all pathways found to be differentially expressed at day 7 post infection in the trypanosomiasis resistance phenotype, which contain genes in the Tir1 QTL. The pathways in this file have been ranked according to the scores obtained after calculating a cosine vector value against the trypanosomiasis resistance phenotype. The higher the score, the more closely linked to a phentype a given pathway is. This allows each pathway to be ranked giving biologists a ...

File type: Excel workbook

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Tags:

abstracts
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african trypanosomiasis
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cosine vector space
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data-driven
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kegg
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Kegg Pathways
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pathway
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pathway-driven
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pathways
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phenotype
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sleeping sickness
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term
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term extraction
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terms
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text
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text mining
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text mining; term extraction; entity recognition
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trait

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M. Kirsh

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A Plane Economy of Space Surfaces From the Mathemati...

Created: 2009-08-07 19:38:05 | Last updated: 2009-12-21 17:32:25

Credits: M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

A perspective on nature is introduced based on a visit to the Plane Geometry of Euclid and reinterpretation of the theory of relativity. Nature is redifined as a special case of proximity that is different from normally the construed physical proximity presented to perception. The world is considered as a special case in which the Laws of Motion of Newton and Special Relativity of Einstein are hopefuly united into a single frame. The science of genetics is revisited and new theory ...

File type: Adobe PDF

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Uploader

Carol Lushbough

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BioExtract Server Workflow Tutorial

Created: 2009-08-07 16:20:06 | Last updated: 2009-08-07 16:25:46

Credits: Carol Lushbough

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial demonstrates how to create a workflow within the BioExtract Server at bioextract.org. Specifically, it shows how to perform a phylogenetic analysis on a set of proteins where the starting point is a query for specific nucleotide gene sequences.

File type: Word 2007 document

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Kimmo Karhu

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Community model and infrastructure for service devel...

Created: 2009-08-04 08:46:13

Credits: Kimmo Karhu

License: Creative Commons Attribution-Noncommercial-Share Alike 3.0 Unported License

Community model and infrastructure for service development

File type: PNG image

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Katy Wolstencroft

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EraSysBio Summer School Taverna Tutorial

Created: 2009-07-24 21:54:27

Credits: Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial is an introduction to Taverna and myExperiment

File type: application/mspowerpoint

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M. Kirsh

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Apparency and Actuality

Created: 2009-07-19 05:24:57 | Last updated: 2009-07-19 05:29:37

Credits: M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

Introduction This manuscript was prepared before my introduction to theory in mythology. My understanding of human behavior with regards to social transmision and communications past and present fell nicely into a discussion of the theory of relativity (re : "Einstein andMythology :The Lengthier the Relations in a Myth the Greater its' Mass"). The discussion here is much bulkier but delves more into facets of biology ,...

File type: Adobe PDF

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Tags:

,
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acids
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actuality
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and
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apparency
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biological
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biological lock and key
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cancer
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cellnucleushereditymemoryenergy
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classification
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code
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cognition
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cognitive
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complexity
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conversion
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descriptiontimeforceuniversaluracilvelocity
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diseasebalance
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distance
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disturbance
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diversity
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dream symbolism
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earth
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egg
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emergenceauto
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emergenceules
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equation
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evolution
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faces of objects
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for
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frame of reference
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function
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genealogyapparenttransparentproximityrepresentationvisualrepresentationsensory
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genetic
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genetic transmission
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graph of egg
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immune
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in
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language and nature
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lifeparadoxpe3rceptionperspectiveprocessesrandomnessrandomnonrandomparitydnarnanucleicrelationships
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light"
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matter
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natural
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natural balance and pathology
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nature
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nature and ethics
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naturemirrorofoncogenesisorigin
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of
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radiationspeciesstructuresunsunlighttheory
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reproductionsolar
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speciesrelativityrepresentationrepresentationeinsteintheoryselectionselective
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verses

Uploader

M. Kirsh

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Induction, Space and Positive Ethics

Created: 2009-07-19 04:08:44 | Last updated: 2009-07-19 04:11:36

Credits: M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

One may purport that ones' awareness of space for scientific purposes comes about from a potential awareness of its' absence that is derived from times when ones attention is not focused on it. Yet simply one might extract the notion that space and entailed properties of it are elemental —i.e. conceptually non reducible and that from which all emanates. The words non-ethical induction, entailing the existence of ethical induction, if compared in a corresponding manner (to indivisible sp...

File type: Adobe PDF

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M. Kirsh

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Genetics Reconstrued From the Mathematics of Einstei...

Created: 2009-07-18 19:00:59 | Last updated: 2009-12-21 17:36:49

Credits: M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

A new perspective of nature is introduced based on a visit to the Plane Geometry of Euclid, The Paralle Postulate and a reinterpretation of the theory of relativity. Nature is redifined as a special case of proximity that is different from normally construed physical proximity that is presented to perception. The world is considered as a special case in which the Laws of Motion of Newton and Special Relativity of Einstein are hopefuly united into a single frame. The science of...

File type: Adobe PDF

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