myExperiment

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Wassinki

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Installing java certificates for services using SSL

Created: 2008-10-15 09:05:44 | Last updated: 2009-02-16 07:37:39

Credits: Wassinki

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This jar file, designed by sun microsystems, helps you to install certificates for java to access services using a secure socket. The complete documentation of this small java tool, including its source, can be found at: http://blogs.sun.com/andreas/entry/no_more_unable_to_find In this document, I will explain how to create a keystore holding the certificate required to access services provided by www.bioinformatics.nl . To install the certificate for www.bioinformatics.nl, do the follow...

File type: Java archive

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Marco Roos

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From biologist to web service to Taverna to myExperi...

Created: 2008-03-21 19:00:12 | Last updated: 2008-03-23 10:39:27

Credits: Marco Roos Martijn Schuemie AID myGrid

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A movie to show the principle of the round trip from a biology question via pieces of code wrapped as web services and combined into a workflow (computational experiment) in Taverna, via uploading to myExperiment and back to the biologist through myExperiment's run facility. NB: at the time of uploading this movie the runner-option was in test-phase. It is important to note that the workflow combines the work of various scientists with different expertise and some at remote locations around ...

File type: AVI video

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Franck Tanoh

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Taverna tutorial

Created: 2008-03-03 11:05:24 | Last updated: 2008-03-03 11:20:45

Credits: Franck Tanoh Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A step by step guide on how to build workflows in Taverna. This tutorial is designed for any background. i welcome your comments and suggestions.

File type: PowerPoint presentation

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Paul Dobson

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Smiles Search of ChemSpider

Created: 2008-02-27 16:21:30 | Last updated: 2012-01-12 21:12:15

Credits: Paul Dobson

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A Pipeline Pilot protocol to search ChemSpider by structure (smiles string) to illustrate use of the ChemSpider wsdl

File type: XML

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Don Cruickshank

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Viking boat

Created: 2007-11-07 11:46:06 | Last updated: 2008-02-06 12:02:05

Credits: Don Cruickshank

License: Creative Commons Attribution-No Derivative Works 3.0 Unported License

This boat is alongside the largest remaining section of Southampton's city wall, next to the Grand Harbour hotel. The sand and blue coloured stone sections on the ground represent the original beach and waterline before the land was reclaimed.

File type: Progressive JPEG image

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boat

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Alan Williams

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Example XSLT file

Created: 2008-09-26 12:13:31

Credits: Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

XSLT file to be used for example workflows

File type: Binary data

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Alan Williams

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Example XML file

Created: 2008-09-26 12:12:41

Credits: Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

XML file to be used for example workflows

File type: XML

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Katy Wolstencroft

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The Data Playground: An Intuitive Workflow Specifica...

Created: 2008-06-02 14:46:40

Credits: Katy Wolstencroft Andrew Gibson

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a copy of the paper we wrote for the 3rd International Conference on e-Science and Grid Computing 2007 (http://www.escience2007.org/index.asp). It won the Best Paper award!

File type: Adobe PDF

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Bas Vroling

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Using Taverna and webservices as tools to revive a d...

Created: 2008-04-20 17:04:40

Credits: Bas Vroling

License: Creative Commons Attribution 3.0 Unported License

In this report a short description is given on how webservices were used as supporting tools for reviving an outdated database containging biological data.

File type: Adobe PDF

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Franck Tanoh

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Taverna tutorial

Created: 2008-03-03 11:15:00 | Last updated: 2008-03-03 11:16:11

Credits: Franck Tanoh Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A step by step guide on how to build workflows in Taverna. Biology oriented but should be ok with other background with a 'tiny' Biology knowledge. I welcome your comments and suggestions.

File type: PowerPoint presentation

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